Sample ID: Escherichia_coli_p1

Cgmlst Stats

Cgmlst Alleles

## Warning: The `x` argument of `as_tibble.matrix()` must have unique column names if `.name_repair` is omitted as of tibble 2.0.0.
## Using compatibility `.name_repair`.

Mlst

Reference: (1)

Ariba

Local database motif report (coding and non-coding)

Resfinder motif report

Reference: (2)

Summary

Quast report

SNP report

References

1.
M. Silva, et al., chewBBACA: A complete suite for gene-by-gene schema creation and strain identification. Microbial Genomics 4 (2018).
2.
E. Zankari, et al., Identification of acquired antimicrobial resistance genes. Journal of Antimicrobial Chemotherapy 67, 2640–2644 (2012).